HCSGD entry for CHMP4B
1. General information
| Official gene symbol | CHMP4B |
|---|---|
| Entrez ID | 128866 |
| Gene full name | charged multivesicular body protein 4B |
| Other gene symbols | C20orf178 CHMP4A CTPP3 SNF7 SNF7-2 Shax1 VPS32B Vps32-2 dJ553F4.4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016197 | Endosomal transport | TAS | biological_process |
| GO:0030496 | Midbody | IDA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1005602485 | 0.9305964667 | 0.6613808846 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4906585651 |
| GSE13712_SHEAR | Down | -0.0191814912 |
| GSE13712_STATIC | Up | 0.1764409059 |
| GSE19018 | Up | 0.0097923716 |
| GSE19899_A1 | Down | -0.3475119985 |
| GSE19899_A2 | Up | 0.3262029572 |
| PubMed_21979375_A1 | Up | 0.1124245228 |
| PubMed_21979375_A2 | Down | -0.4112106263 |
| GSE35957 | Up | 0.8649724600 |
| GSE36640 | Up | 0.1906572267 |
| GSE54402 | Up | 0.1099420407 |
| GSE9593 | Up | 0.5276446242 |
| GSE43922 | Down | -0.0392040552 |
| GSE24585 | Down | -0.0346779258 |
| GSE37065 | Up | 0.0387903342 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Up | 0.5011481181 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-340-5p | MIMAT0004692 | MIRT019610 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
