HCSGD entry for COL4A6
1. General information
| Official gene symbol | COL4A6 |
|---|---|
| Entrez ID | 1288 |
| Gene full name | collagen, type IV, alpha 6 |
| Other gene symbols | CXDELq22.3 DELXq22.3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005201 | Extracellular matrix structural constituent | IEA | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005587 | Collagen type IV | NAS | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0071230 | Cellular response to amino acid stimulus | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0295167015 | 0.8159849360 | 0.3974176892 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.5194885798 |
| GSE13712_SHEAR | Up | 1.7317670998 |
| GSE13712_STATIC | Up | 1.6384940161 |
| GSE19018 | Down | -0.0285736968 |
| GSE19899_A1 | Up | 0.1329631785 |
| GSE19899_A2 | Up | 0.2156582905 |
| PubMed_21979375_A1 | Up | 0.5467811005 |
| PubMed_21979375_A2 | Up | 0.9530248056 |
| GSE35957 | Up | 0.1274810433 |
| GSE36640 | Up | 0.2394903790 |
| GSE54402 | Down | -0.9453404729 |
| GSE9593 | Down | -0.0557942875 |
| GSE43922 | Up | 0.3070817648 |
| GSE24585 | Down | -0.4474251121 |
| GSE37065 | Down | -0.0687335740 |
| GSE28863_A1 | Down | -0.1067113767 |
| GSE28863_A2 | Down | -0.1304683071 |
| GSE28863_A3 | Up | 0.1728562689 |
| GSE28863_A4 | Up | 0.1041880668 |
| GSE48662 | Down | -0.0488324220 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-197-3p | MIMAT0000227 | MIRT048147 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
