HCSGD entry for COL4A5
1. General information
| Official gene symbol | COL4A5 |
|---|---|
| Entrez ID | 1287 |
| Gene full name | collagen, type IV, alpha 5 |
| Other gene symbols | ASLN ATS CA54 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005201 | Extracellular matrix structural constituent | IEA | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005587 | Collagen type IV | IEA | cellular_component |
| GO:0005605 | Basal lamina | IEA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0007528 | Neuromuscular junction development | IEA | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0031594 | Neuromuscular junction | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0198018426 | 0.8572929866 | 0.3412990190 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.5550490477 |
| GSE13712_SHEAR | Up | 0.4131835701 |
| GSE13712_STATIC | Up | 0.4320657519 |
| GSE19018 | Down | -0.0121845665 |
| GSE19899_A1 | Up | 0.2167773701 |
| GSE19899_A2 | Down | -0.0478362082 |
| PubMed_21979375_A1 | Up | 0.3118647925 |
| PubMed_21979375_A2 | Up | 0.5613746841 |
| GSE35957 | Up | 0.5670719528 |
| GSE36640 | Up | 1.4594097687 |
| GSE54402 | Down | -1.2468189862 |
| GSE9593 | Up | 0.6721664595 |
| GSE43922 | Up | 0.0357278586 |
| GSE24585 | Up | 0.4042506036 |
| GSE37065 | Down | -0.1046596494 |
| GSE28863_A1 | Down | -0.0520848431 |
| GSE28863_A2 | Up | 0.0306423317 |
| GSE28863_A3 | Up | 0.2238069597 |
| GSE28863_A4 | Up | 0.0726961957 |
| GSE48662 | Down | -0.2943410793 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018772 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030043 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
