HCSGD entry for LOXHD1
1. General information
| Official gene symbol | LOXHD1 |
|---|---|
| Entrez ID | 125336 |
| Gene full name | lipoxygenase homology domains 1 |
| Other gene symbols | DFNB77 LH2D1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005262 | Calcium channel activity | IBA | molecular_function |
| GO:0006810 | Transport | IBA | biological_process |
| GO:0006812 | Cation transport | IBA | biological_process |
| GO:0007605 | Sensory perception of sound | IEA IMP | biological_process |
| GO:0016020 | Membrane | IBA | cellular_component |
| GO:0030001 | Metal ion transport | IBA | biological_process |
| GO:0032420 | Stereocilium | IEA ISS | cellular_component |
| GO:0034220 | Ion transmembrane transport | IBA | biological_process |
| GO:0050982 | Detection of mechanical stimulus | IBA | biological_process |
| GO:0055085 | Transmembrane transport | IBA | biological_process |
| GO:0070588 | Calcium ion transmembrane transport | IBA | biological_process |
| GO:0072511 | Divalent inorganic cation transport | IBA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5508246533 | 0.8798885871 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0837318138 |
| GSE13712_SHEAR | Down | -0.0426890396 |
| GSE13712_STATIC | Down | -0.0531981786 |
| GSE19018 | Up | 0.1224605737 |
| GSE19899_A1 | Up | 0.0014008810 |
| GSE19899_A2 | Down | -0.1822810476 |
| PubMed_21979375_A1 | Down | -0.0237100134 |
| PubMed_21979375_A2 | Down | -0.1193241802 |
| GSE35957 | Up | 0.1613968071 |
| GSE36640 | Down | -0.0604157660 |
| GSE54402 | Up | 0.0665167156 |
| GSE9593 | Up | 0.0960061788 |
| GSE43922 | Up | 0.1148895521 |
| GSE24585 | Up | 0.0609252699 |
| GSE37065 | Down | -0.0394138587 |
| GSE28863_A1 | Down | -0.0155965716 |
| GSE28863_A2 | Up | 0.1648282314 |
| GSE28863_A3 | Up | 0.2759112248 |
| GSE28863_A4 | Up | 0.0744105607 |
| GSE48662 | Down | -0.0067615942 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-25-3p | MIMAT0000081 | MIRT050251 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
