HCSGD entry for CCDC78
1. General information
| Official gene symbol | CCDC78 |
|---|---|
| Entrez ID | 124093 |
| Gene full name | coiled-coil domain containing 78 |
| Other gene symbols | C16orf25 CNM4 JFP10 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003009 | Skeletal muscle contraction | IMP | biological_process |
| GO:0005737 | Cytoplasm | IDA IEA | cellular_component |
| GO:0005814 | Centriole | IDA | cellular_component |
| GO:0016529 | Sarcoplasmic reticulum | IDA | cellular_component |
| GO:0030030 | Cell projection organization | IEA | biological_process |
| GO:0042383 | Sarcolemma | IDA | cellular_component |
| GO:0048471 | Perinuclear region of cytoplasm | IDA | cellular_component |
| GO:0098535 | De novo centriole assembly | IDA | biological_process |
| GO:0098536 | Deuterosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2158344098 | 0.8809759052 | 0.8943604377 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1152589749 |
| GSE13712_SHEAR | Up | 0.2025652215 |
| GSE13712_STATIC | Down | -0.1068307643 |
| GSE19018 | Up | 0.0336715300 |
| GSE19899_A1 | Down | -0.1110159427 |
| GSE19899_A2 | Up | 0.3747576848 |
| PubMed_21979375_A1 | Down | -0.2607305019 |
| PubMed_21979375_A2 | Up | 0.6155428989 |
| GSE35957 | Up | 0.0326519106 |
| GSE36640 | Up | 0.2452879929 |
| GSE54402 | Up | 0.0047454407 |
| GSE9593 | Down | -0.1810757724 |
| GSE43922 | Up | 0.0164029901 |
| GSE24585 | Up | 0.1180598627 |
| GSE37065 | Down | -0.0851525269 |
| GSE28863_A1 | Down | -0.1187891968 |
| GSE28863_A2 | Up | 0.0392617584 |
| GSE28863_A3 | Up | 0.2859278626 |
| GSE28863_A4 | Up | 0.1783055843 |
| GSE48662 | Up | 0.5358388810 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
