HCSGD entry for TRIM6

1. General information

Official gene symbolTRIM6
Entrez ID117854
Gene full nametripartite motif containing 6
Other gene symbolsRNF89
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

color bar
This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0003674Molecular_functionNDmolecular_function
GO:0005622IntracellularIEAcellular_component
GO:0005737CytoplasmIDA IEAcellular_component
GO:0008270Zinc ion bindingIEAmolecular_function
GO:0070206Protein trimerizationIDAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.96147325330.00090154630.99999024730.0566338902

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.3707004857
GSE13712_SHEARUp0.7346308479
GSE13712_STATICUp1.2160813164
GSE19018Down-0.9982516733
GSE19899_A1Down-1.2517526956
GSE19899_A2Down-1.3473849569
PubMed_21979375_A1Down-2.3126469610
PubMed_21979375_A2Down-1.4687570342
GSE35957Down-1.5864364967
GSE36640Down-2.5042894148
GSE54402Down-2.1845112419
GSE9593Up0.1893816636
GSE43922--
GSE24585--
GSE37065--
GSE28863_A1Down-0.1270115685
GSE28863_A2Down-0.0312173171
GSE28863_A3Down-0.1856726745
GSE28863_A4Up0.0565917831
GSE48662Down-0.2015481308

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-26b-5pMIMAT0000083MIRT029893MicroarrayFunctional MTI (Weak)19088304
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.