HCSGD entry for MYSM1


1. General information

Official gene symbolMYSM1
Entrez ID114803
Gene full nameMyb-like, SWIRM and MPN domains 1
Other gene symbols2A-DUB 2ADUB RP4-592A1.1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0003677DNA bindingIEAmolecular_function
GO:0003682Chromatin bindingIEAmolecular_function
GO:0003713Transcription coactivator activityIDAmolecular_function
GO:0004221Ubiquitin thiolesterase activityIDAmolecular_function
GO:0004843Ubiquitin-specific protease activityIDAmolecular_function
GO:0005634NucleusIDAcellular_component
GO:0006338Chromatin remodelingIMPbiological_process
GO:0006351Transcription, DNA-templatedIEAbiological_process
GO:0006508ProteolysisIEAbiological_process
GO:0008237Metallopeptidase activityIMPmolecular_function
GO:0032403Protein complex bindingIDAmolecular_function
GO:0035522Monoubiquitinated histone H2A deubiquitinationIMPbiological_process
GO:0042393Histone bindingIDAmolecular_function
GO:0045944Positive regulation of transcription from RNA polymerase II promoterIMPbiological_process
GO:0046872Metal ion bindingIEAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.73866014590.17477687780.99999024730.8091689995

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0395456690
GSE13712_SHEARDown-0.4548149510
GSE13712_STATICDown-0.4627738122
GSE19018Down-0.0276051522
GSE19899_A1Up0.1726449056
GSE19899_A2Up0.0221297709
PubMed_21979375_A1Down-0.0640879191
PubMed_21979375_A2Up0.0941843736
GSE35957Down-0.1908617226
GSE36640Down-0.2842477770
GSE54402Up0.2007292645
GSE9593Down-0.0838177327
GSE43922Up0.2783792093
GSE24585Up0.1485078575
GSE37065Up0.1720364706
GSE28863_A1Down-0.1936000973
GSE28863_A2Up0.3708152647
GSE28863_A3Down-0.8745974427
GSE28863_A4Down-0.3016915659
GSE48662Down-0.0529995149

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-484MIMAT0002174MIRT041950CLASHFunctional MTI (Weak)23622248
hsa-miR-186-5pMIMAT0000456MIRT045259CLASHFunctional MTI (Weak)23622248
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.