HCSGD entry for SLITRK1
1. General information
| Official gene symbol | SLITRK1 |
|---|---|
| Entrez ID | 114798 |
| Gene full name | SLIT and NTRK-like family, member 1 |
| Other gene symbols | LRRC12 RP11-395N17.1 TTM |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0007409 | Axonogenesis | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030534 | Adult behavior | IEA | biological_process |
| GO:0035264 | Multicellular organism growth | IEA | biological_process |
| GO:0042592 | Homeostatic process | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2530264998 | 0.3315448083 | 0.9427406338 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0513693698 |
| GSE13712_SHEAR | Up | 0.0400486031 |
| GSE13712_STATIC | Down | -0.0849851007 |
| GSE19018 | Down | -0.1845135176 |
| GSE19899_A1 | Up | 0.2660586507 |
| GSE19899_A2 | Up | 0.0743805975 |
| PubMed_21979375_A1 | Down | -0.0422870952 |
| PubMed_21979375_A2 | Up | 0.0115194424 |
| GSE35957 | Up | 1.6998978691 |
| GSE36640 | Up | 0.1475390628 |
| GSE54402 | Up | 0.0902484408 |
| GSE9593 | Up | 0.0157394813 |
| GSE43922 | Down | -0.0237271540 |
| GSE24585 | Up | 0.0127664484 |
| GSE37065 | Up | 0.0249144073 |
| GSE28863_A1 | Down | -1.1710950036 |
| GSE28863_A2 | Up | 0.1599630181 |
| GSE28863_A3 | Up | 0.1245881201 |
| GSE28863_A4 | Up | 0.2451655978 |
| GSE48662 | Down | -0.3275718979 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-24-1-5p | MIMAT0000079 | MIRT005653 | GFP reporter assay//In situ hybridization//Luciferase reporter assay | Functional MTI | 16224024 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT018680 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
