HCSGD entry for TRIM9
1. General information
| Official gene symbol | TRIM9 |
|---|---|
| Entrez ID | 114088 |
| Gene full name | tripartite motif containing 9 |
| Other gene symbols | RNF91 SPRING |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000149 | SNARE binding | IEA | molecular_function |
| GO:0004842 | Ubiquitin-protein ligase activity | IDA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005856 | Cytoskeleton | IEA | cellular_component |
| GO:0008021 | Synaptic vesicle | IEA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016079 | Synaptic vesicle exocytosis | IEA | biological_process |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0030425 | Dendrite | IDA | cellular_component |
| GO:0035544 | Negative regulation of SNARE complex assembly | IEA | biological_process |
| GO:0042803 | Protein homodimerization activity | IPI | molecular_function |
| GO:0043161 | Proteasome-mediated ubiquitin-dependent protein catabolic process | IDA | biological_process |
| GO:0045955 | Negative regulation of calcium ion-dependent exocytosis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2775602029 | 0.9543046731 | 0.9746544691 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2248056951 |
| GSE13712_SHEAR | Down | -0.0650058841 |
| GSE13712_STATIC | Down | -0.0166977885 |
| GSE19018 | Up | 0.0438995386 |
| GSE19899_A1 | Up | 0.0144545705 |
| GSE19899_A2 | Up | 0.0973642016 |
| PubMed_21979375_A1 | Up | 0.1903164771 |
| PubMed_21979375_A2 | Up | 0.0390454391 |
| GSE35957 | Down | -0.0550030169 |
| GSE36640 | Down | -0.0647486132 |
| GSE54402 | Up | 0.5273135564 |
| GSE9593 | Up | 0.0900216917 |
| GSE43922 | Up | 0.0233394672 |
| GSE24585 | Up | 0.3022974436 |
| GSE37065 | Up | 0.1509669272 |
| GSE28863_A1 | Up | 0.0281737191 |
| GSE28863_A2 | Up | 0.0863495278 |
| GSE28863_A3 | Up | 0.1462192020 |
| GSE28863_A4 | Down | -0.0069914856 |
| GSE48662 | Up | 0.0225501765 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017814 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-1 | MIMAT0000416 | MIRT023786 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
