HCSGD entry for LARP4
1. General information
| Official gene symbol | LARP4 |
|---|---|
| Entrez ID | 113251 |
| Gene full name | La ribonucleoprotein domain family, member 4 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0007010 | Cytoskeleton organization | IMP | biological_process |
| GO:0022604 | Regulation of cell morphogenesis | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0494254702 | 0.9050120854 | 0.4882649813 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1933346343 |
| GSE13712_SHEAR | Up | 0.6191077322 |
| GSE13712_STATIC | Up | 0.4309949198 |
| GSE19018 | Down | -0.4872655720 |
| GSE19899_A1 | Up | 0.1539914904 |
| GSE19899_A2 | Up | 0.7177598552 |
| PubMed_21979375_A1 | Up | 0.5655059151 |
| PubMed_21979375_A2 | Up | 0.4993130739 |
| GSE35957 | Up | 0.4575934292 |
| GSE36640 | Down | -0.1869416390 |
| GSE54402 | Up | 0.3362720797 |
| GSE9593 | Up | 0.0069294554 |
| GSE43922 | Down | -0.0238868611 |
| GSE24585 | Down | -0.0372917557 |
| GSE37065 | Down | -0.0405611872 |
| GSE28863_A1 | Up | 0.0346053824 |
| GSE28863_A2 | Down | -0.0513451469 |
| GSE28863_A3 | Down | -0.3836451682 |
| GSE28863_A4 | Up | 0.4135854632 |
| GSE48662 | Up | 0.0731611436 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT003525 | Luciferase reporter assay | Functional MTI | 20144220 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028536 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031626 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-423-3p | MIMAT0001340 | MIRT042545 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-148b-3p | MIMAT0000759 | MIRT043579 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 20144220 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
