HCSGD entry for DDX42
1. General information
| Official gene symbol | DDX42 |
|---|---|
| Entrez ID | 11325 |
| Gene full name | DEAD (Asp-Glu-Ala-Asp) box helicase 42 |
| Other gene symbols | RHELP RNAHP SF3b125 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0008026 | ATP-dependent helicase activity | IEA | molecular_function |
| GO:0008104 | Protein localization | IDA | biological_process |
| GO:0015030 | Cajal body | IEA | cellular_component |
| GO:0016607 | Nuclear speck | IEA | cellular_component |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3241519737 | 0.4714002204 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0699031783 |
| GSE13712_SHEAR | Up | 0.0944570097 |
| GSE13712_STATIC | Up | 0.1926011775 |
| GSE19018 | Up | 0.0368570986 |
| GSE19899_A1 | Down | -0.1948945135 |
| GSE19899_A2 | Down | -0.0613327901 |
| PubMed_21979375_A1 | Down | -0.2919418140 |
| PubMed_21979375_A2 | Down | -0.3393865022 |
| GSE35957 | Up | 0.1377168005 |
| GSE36640 | Up | 0.0277627321 |
| GSE54402 | Up | 0.0885415579 |
| GSE9593 | Up | 0.2980505294 |
| GSE43922 | Down | -0.2195561548 |
| GSE24585 | Up | 0.3790361077 |
| GSE37065 | Down | -0.1270930225 |
| GSE28863_A1 | Up | 0.6057878503 |
| GSE28863_A2 | Up | 0.5668074395 |
| GSE28863_A3 | Down | -0.4075832171 |
| GSE28863_A4 | Up | 0.0595627311 |
| GSE48662 | Down | -0.3156155878 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023974 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040200 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-345-5p | MIMAT0000772 | MIRT042731 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045158 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047595 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99a-5p | MIMAT0000097 | MIRT048682 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
