HCSGD entry for SYNRG
1. General information
| Official gene symbol | SYNRG |
|---|---|
| Entrez ID | 11276 |
| Gene full name | synergin, gamma |
| Other gene symbols | AP1GBP1 SYNG |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | TAS | cellular_component |
| GO:0005794 | Golgi apparatus | TAS | cellular_component |
| GO:0006886 | Intracellular protein transport | TAS | biological_process |
| GO:0006897 | Endocytosis | IEA | biological_process |
| GO:0030121 | AP-1 adaptor complex | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2170511569 | 0.8364005433 | 0.8956794795 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1687565254 |
| GSE13712_SHEAR | Up | 0.0341966561 |
| GSE13712_STATIC | Up | 0.1248632680 |
| GSE19018 | Down | -0.0680867802 |
| GSE19899_A1 | Up | 0.0030006193 |
| GSE19899_A2 | Up | 0.0846435593 |
| PubMed_21979375_A1 | Up | 0.0501731712 |
| PubMed_21979375_A2 | Up | 0.3005252153 |
| GSE35957 | Down | -0.1000223889 |
| GSE36640 | Up | 0.1434570783 |
| GSE54402 | Down | -0.0076767327 |
| GSE9593 | Up | 0.2203988928 |
| GSE43922 | Up | 0.1519417570 |
| GSE24585 | Up | 0.4353712607 |
| GSE37065 | Up | 0.2741387951 |
| GSE28863_A1 | Up | 0.0858785971 |
| GSE28863_A2 | Up | 0.2160794544 |
| GSE28863_A3 | Down | -0.9673309017 |
| GSE28863_A4 | Down | -0.0138831625 |
| GSE48662 | Up | 0.0374141344 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1180-3p | MIMAT0005825 | MIRT035910 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
