HCSGD entry for SNX18
1. General information
| Official gene symbol | SNX18 |
|---|---|
| Entrez ID | 112574 |
| Gene full name | sorting nexin 18 |
| Other gene symbols | SH3PX2 SH3PXD3B SNAG1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000281 | Mitotic cytokinesis | IMP | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005546 | Phosphatidylinositol-4,5-bisphosphate binding | IDA | molecular_function |
| GO:0006897 | Endocytosis | IDA IMP | biological_process |
| GO:0007067 | Mitosis | IEA | biological_process |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0010008 | Endosome membrane | IEA | cellular_component |
| GO:0012505 | Endomembrane system | IEA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016023 | Cytoplasmic membrane-bounded vesicle | IDA | cellular_component |
| GO:0016197 | Endosomal transport | IMP | biological_process |
| GO:0030136 | Clathrin-coated vesicle | IDA | cellular_component |
| GO:0030426 | Growth cone | IEA | cellular_component |
| GO:0030659 | Cytoplasmic vesicle membrane | IEA | cellular_component |
| GO:0031234 | Extrinsic component of cytoplasmic side of plasma membrane | IDA | cellular_component |
| GO:0036089 | Cleavage furrow formation | IMP | biological_process |
| GO:0043025 | Neuronal cell body | IEA | cellular_component |
| GO:0043547 | Positive regulation of GTPase activity | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9768257627 | 0.0218192356 | 0.9999902473 | 0.2848730655 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4696581259 |
| GSE13712_SHEAR | Down | -0.3298075496 |
| GSE13712_STATIC | Up | 0.0172661654 |
| GSE19018 | Down | -0.2139007091 |
| GSE19899_A1 | Down | -0.9884925739 |
| GSE19899_A2 | Down | -0.4282075677 |
| PubMed_21979375_A1 | Down | -0.1921336215 |
| PubMed_21979375_A2 | Down | -0.6210064268 |
| GSE35957 | Up | 0.2281292879 |
| GSE36640 | Down | -0.2967508161 |
| GSE54402 | Down | -0.2746657498 |
| GSE9593 | Up | 0.0427759677 |
| GSE43922 | Down | -0.5924772023 |
| GSE24585 | Up | 0.0099131105 |
| GSE37065 | Down | -0.0480697193 |
| GSE28863_A1 | Up | 0.0454642860 |
| GSE28863_A2 | Down | -0.0078015048 |
| GSE28863_A3 | Down | -0.0695519208 |
| GSE28863_A4 | Down | -0.3296694652 |
| GSE48662 | Up | 0.5396799472 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022134 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041252 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
