HCSGD entry for NUP50
1. General information
| Official gene symbol | NUP50 |
|---|---|
| Entrez ID | 10762 |
| Gene full name | nucleoporin 50kDa |
| Other gene symbols | NPAP60 NPAP60L |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000278 | Mitotic cell cycle | TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005643 | Nuclear pore | IEA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0007077 | Mitotic nuclear envelope disassembly | TAS | biological_process |
| GO:0008645 | Hexose transport | TAS | biological_process |
| GO:0010827 | Regulation of glucose transport | TAS | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0015758 | Glucose transport | TAS | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0019221 | Cytokine-mediated signaling pathway | TAS | biological_process |
| GO:0031965 | Nuclear membrane | IDA | cellular_component |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0046907 | Intracellular transport | IEA | biological_process |
| GO:0051028 | MRNA transport | IEA | biological_process |
| GO:0055085 | Transmembrane transport | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2610295657 | 0.8490181262 | 0.9542443333 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0866513684 |
| GSE13712_SHEAR | Up | 0.2686058994 |
| GSE13712_STATIC | Up | 0.1793347434 |
| GSE19018 | Down | -0.1192165262 |
| GSE19899_A1 | Up | 0.1530127894 |
| GSE19899_A2 | Up | 0.0119408045 |
| PubMed_21979375_A1 | Up | 0.2270474572 |
| PubMed_21979375_A2 | Up | 0.2856641568 |
| GSE35957 | Up | 0.1065348367 |
| GSE36640 | Down | -0.8764849135 |
| GSE54402 | Up | 0.3623572483 |
| GSE9593 | Down | -0.0158084592 |
| GSE43922 | Up | 0.2826164503 |
| GSE24585 | Down | -0.0388134233 |
| GSE37065 | Up | 0.0138163701 |
| GSE28863_A1 | Down | -0.0728410712 |
| GSE28863_A2 | Up | 0.0336873234 |
| GSE28863_A3 | Up | 0.1071729334 |
| GSE28863_A4 | Up | 0.1130010872 |
| GSE48662 | Down | -0.3562894876 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-340-5p | MIMAT0004692 | MIRT019568 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022473 | Proteomics | Functional MTI (Weak) | 18668037 |
| hsa-miR-1 | MIMAT0000416 | MIRT023675 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT026042 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027131 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031641 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031641 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036881 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040233 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
