HCSGD entry for RAI1
1. General information
| Official gene symbol | RAI1 |
|---|---|
| Entrez ID | 10743 |
| Gene full name | retinoic acid induced 1 |
| Other gene symbols | SMCR SMS |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001501 | Skeletal system development | IEA | biological_process |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0040015 | Negative regulation of multicellular organism growth | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9079895825 | 0.4167535846 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1673984482 |
| GSE13712_SHEAR | Down | -0.0593520341 |
| GSE13712_STATIC | Up | 0.1438613582 |
| GSE19018 | Up | 0.0326116054 |
| GSE19899_A1 | Down | -0.0724456850 |
| GSE19899_A2 | Up | 0.0220527228 |
| PubMed_21979375_A1 | Down | -0.1860769050 |
| PubMed_21979375_A2 | Up | 0.0243983609 |
| GSE35957 | Down | -0.1571205866 |
| GSE36640 | Up | 0.0082471509 |
| GSE54402 | Down | -0.0039637580 |
| GSE9593 | Up | 0.0373418775 |
| GSE43922 | Up | 0.0094993366 |
| GSE24585 | Down | -0.3266933359 |
| GSE37065 | Down | -0.2480824480 |
| GSE28863_A1 | Up | 0.2828827290 |
| GSE28863_A2 | Up | 0.0594463058 |
| GSE28863_A3 | Up | 0.0774646898 |
| GSE28863_A4 | Down | -0.0712833490 |
| GSE48662 | Up | 0.0753971135 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-744-5p | MIMAT0004945 | MIRT037657 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-769-3p | MIMAT0003887 | MIRT039088 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-504-5p | MIMAT0002875 | MIRT041078 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052256 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-3687 | MIMAT0018115 | MIRT052878 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
