HCSGD entry for ARID3B
1. General information
| Official gene symbol | ARID3B |
|---|---|
| Entrez ID | 10620 |
| Gene full name | AT rich interactive domain 3B (BRIGHT-like) |
| Other gene symbols | BDP DRIL2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA NAS | molecular_function |
| GO:0005634 | Nucleus | IEA NAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0008150 | Biological_process | ND | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0857429353 | 0.2540678508 | 0.6142732172 | 0.9667572977 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4828729208 |
| GSE13712_SHEAR | Up | 0.0780878816 |
| GSE13712_STATIC | Down | -0.3492495525 |
| GSE19018 | Down | -0.5755635286 |
| GSE19899_A1 | Up | 0.3378531846 |
| GSE19899_A2 | Up | 0.5201524486 |
| PubMed_21979375_A1 | Up | 3.0306035234 |
| PubMed_21979375_A2 | Up | 0.7866024025 |
| GSE35957 | Down | -0.2535634176 |
| GSE36640 | Down | -0.7187971294 |
| GSE54402 | Up | 1.1514417965 |
| GSE9593 | Down | -0.1120542150 |
| GSE43922 | Up | 0.2854449374 |
| GSE24585 | Up | 0.0301704623 |
| GSE37065 | Up | 0.0625547395 |
| GSE28863_A1 | Up | 0.0135231669 |
| GSE28863_A2 | Down | -0.1368045225 |
| GSE28863_A3 | Up | 0.1111622306 |
| GSE28863_A4 | Down | -0.1653542809 |
| GSE48662 | Down | -0.2972507124 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-125a-5p | MIMAT0000443 | MIRT005419 | Immunofluorescence//qRT-PCR//Western blot | Functional MTI | 19881956 |
| hsa-miR-125b-5p | MIMAT0000423 | MIRT006719 | Luciferase reporter assay | Functional MTI | 22307404 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT018595 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029972 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-181d-5p | MIMAT0002821 | MIRT041182 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7f-5p | MIMAT0000067 | MIRT051363 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052058 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052506 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-125a-5p | MIMAT0000443 | NA | hsa-miR-125a-5p | {Western blot} | {overexpression} | 19881956 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
