HCSGD entry for TGOLN2
1. General information
| Official gene symbol | TGOLN2 |
|---|---|
| Entrez ID | 10618 |
| Gene full name | trans-golgi network protein 2 |
| Other gene symbols | TGN38 TGN46 TGN48 TGN51 TTGN2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005802 | Trans-Golgi network | IDA IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030133 | Transport vesicle | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0302751111 | 0.9746710687 | 0.4030709155 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0445560429 |
| GSE13712_SHEAR | Up | 0.1213895354 |
| GSE13712_STATIC | Up | 0.0982194606 |
| GSE19018 | Up | 0.3676439188 |
| GSE19899_A1 | Up | 0.0439589540 |
| GSE19899_A2 | Up | 0.5682083388 |
| PubMed_21979375_A1 | Down | -0.0384186865 |
| PubMed_21979375_A2 | Up | 0.6041581248 |
| GSE35957 | Up | 0.3912738396 |
| GSE36640 | Up | 0.5878090763 |
| GSE54402 | Down | -0.2202037610 |
| GSE9593 | Up | 0.5089621891 |
| GSE43922 | Up | 0.1584642077 |
| GSE24585 | Up | 0.0812449845 |
| GSE37065 | Down | -0.0290795378 |
| GSE28863_A1 | Up | 0.7070775856 |
| GSE28863_A2 | Up | 0.6302423580 |
| GSE28863_A3 | Down | -0.2688632595 |
| GSE28863_A4 | Down | -0.2385613362 |
| GSE48662 | Up | 0.3823204798 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022565 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025778 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-33a-5p | MIMAT0000091 | MIRT028198 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-935 | MIMAT0004978 | MIRT036655 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045045 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046476 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051296 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
