HCSGD entry for TRIM38
1. General information
| Official gene symbol | TRIM38 |
|---|---|
| Entrez ID | 10475 |
| Gene full name | tripartite motif containing 38 |
| Other gene symbols | RNF15 RORET |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004871 | Signal transducer activity | IMP | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0007165 | Signal transduction | IMP | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0032648 | Regulation of interferon-beta production | IEA | biological_process |
| GO:0043123 | Positive regulation of I-kappaB kinase/NF-kappaB signaling | IMP | biological_process |
| GO:0043161 | Proteasome-mediated ubiquitin-dependent protein catabolic process | IEA | biological_process |
| GO:0045070 | Positive regulation of viral genome replication | IEA | biological_process |
| GO:0050687 | Negative regulation of defense response to virus | IEA | biological_process |
| GO:0070936 | Protein K48-linked ubiquitination | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0180096463 | 0.7546583147 | 0.3287322469 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1412991993 |
| GSE13712_SHEAR | Up | 0.6168282591 |
| GSE13712_STATIC | Up | 0.7136025078 |
| GSE19018 | Down | -0.2929243237 |
| GSE19899_A1 | Up | 0.0477378158 |
| GSE19899_A2 | Up | 0.0141131595 |
| PubMed_21979375_A1 | Down | -0.8610176887 |
| PubMed_21979375_A2 | Up | 0.3248617348 |
| GSE35957 | Down | -0.2742448060 |
| GSE36640 | Up | 0.5811908645 |
| GSE54402 | Down | -0.2215034024 |
| GSE9593 | Up | 0.5535238185 |
| GSE43922 | Up | 0.3485975993 |
| GSE24585 | Up | 0.8941293277 |
| GSE37065 | Up | 0.6220195977 |
| GSE28863_A1 | Up | 0.7230172750 |
| GSE28863_A2 | Up | 0.6113741183 |
| GSE28863_A3 | Down | -0.6461263141 |
| GSE28863_A4 | Down | -0.2636950792 |
| GSE48662 | Up | 0.2371412184 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022126 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030670 | Microarray | Functional MTI (Weak) | 18591254 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
