HCSGD entry for CDX4
1. General information
| Official gene symbol | CDX4 |
|---|---|
| Entrez ID | 1046 |
| Gene full name | caudal type homeobox 4 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000122 | Negative regulation of transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0000976 | Transcription regulatory region sequence-specific DNA binding | IEA | molecular_function |
| GO:0001568 | Blood vessel development | IEA | biological_process |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0009952 | Anterior/posterior pattern specification | IEA | biological_process |
| GO:0060711 | Labyrinthine layer development | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7716729456 | 0.8295958588 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1345059093 |
| GSE13712_SHEAR | Down | -0.1316757465 |
| GSE13712_STATIC | Down | -0.0988862150 |
| GSE19018 | Up | 0.0411791087 |
| GSE19899_A1 | Up | 0.1243601940 |
| GSE19899_A2 | Up | 0.1611157559 |
| PubMed_21979375_A1 | Up | 0.0414161080 |
| PubMed_21979375_A2 | Down | -0.0773535947 |
| GSE35957 | Down | -0.0520407741 |
| GSE36640 | Up | 0.1073054669 |
| GSE54402 | Up | 0.0813557183 |
| GSE9593 | Up | 0.0176055910 |
| GSE43922 | Up | 0.0133824986 |
| GSE24585 | Up | 0.0051063779 |
| GSE37065 | Down | -0.0138784266 |
| GSE28863_A1 | Up | 0.0420138486 |
| GSE28863_A2 | Down | -0.1330057883 |
| GSE28863_A3 | Down | -0.0444484873 |
| GSE28863_A4 | Up | 0.1284915554 |
| GSE48662 | Down | -0.0470924102 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017920 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
