HCSGD entry for SEC24B
1. General information
| Official gene symbol | SEC24B |
|---|---|
| Entrez ID | 10427 |
| Gene full name | SEC24 family, member B (S. cerevisiae) |
| Other gene symbols | SEC24 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0002474 | Antigen processing and presentation of peptide antigen via MHC class I | TAS | biological_process |
| GO:0005215 | Transporter activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005789 | Endoplasmic reticulum membrane | TAS | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IEA TAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0012507 | ER to Golgi transport vesicle membrane | TAS | cellular_component |
| GO:0016020 | Membrane | TAS | cellular_component |
| GO:0016192 | Vesicle-mediated transport | TAS | biological_process |
| GO:0018279 | Protein N-linked glycosylation via asparagine | TAS | biological_process |
| GO:0019886 | Antigen processing and presentation of exogenous peptide antigen via MHC class II | TAS | biological_process |
| GO:0030127 | COPII vesicle coat | IEA | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0048208 | COPII vesicle coating | TAS | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7691549029 | 0.3170032560 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1348456457 |
| GSE13712_SHEAR | Up | 0.2582884291 |
| GSE13712_STATIC | Up | 0.1283902522 |
| GSE19018 | Down | -0.1169692642 |
| GSE19899_A1 | Up | 0.0880067734 |
| GSE19899_A2 | Up | 0.0382292894 |
| PubMed_21979375_A1 | Up | 0.4114000091 |
| PubMed_21979375_A2 | Down | -0.0120554284 |
| GSE35957 | Up | 0.3165208858 |
| GSE36640 | Up | 0.1572837160 |
| GSE54402 | Up | 0.1161865464 |
| GSE9593 | Up | 0.0345279333 |
| GSE43922 | Down | -0.0725906857 |
| GSE24585 | Down | -0.0959518485 |
| GSE37065 | Down | -0.0521781007 |
| GSE28863_A1 | Up | 0.0144810043 |
| GSE28863_A2 | Up | 0.0279106210 |
| GSE28863_A3 | Down | -0.2157015883 |
| GSE28863_A4 | Down | -0.3365815721 |
| GSE48662 | Down | -0.6536684940 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT020621 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027426 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028448 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-296-3p | MIMAT0004679 | MIRT038485 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT044925 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-18a-5p | MIMAT0000072 | MIRT050723 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051230 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
