HCSGD entry for HNRNPR
1. General information
| Official gene symbol | HNRNPR |
|---|---|
| Entrez ID | 10236 |
| Gene full name | heterogeneous nuclear ribonucleoprotein R |
| Other gene symbols | HNRPR hnRNP R hnRNP-R |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | NAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
| GO:0005654 | Nucleoplasm | IDA TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | NAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006397 | MRNA processing | NAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0019013 | Viral nucleocapsid | IEA | cellular_component |
| GO:0030529 | Ribonucleoprotein complex | IDA IEA | cellular_component |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9955452794 | 0.0036408343 | 0.9999902473 | 0.1226809463 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0858261345 |
| GSE13712_SHEAR | Down | -0.0955615883 |
| GSE13712_STATIC | Down | -0.3732155457 |
| GSE19018 | Down | -0.5727059286 |
| GSE19899_A1 | Down | -0.3795636489 |
| GSE19899_A2 | Down | -0.7899507100 |
| PubMed_21979375_A1 | Down | -0.9620638062 |
| PubMed_21979375_A2 | Down | -0.8025489010 |
| GSE35957 | Down | -0.4583215173 |
| GSE36640 | Down | -1.1834183099 |
| GSE54402 | Down | -0.2364198678 |
| GSE9593 | Down | -0.5596753742 |
| GSE43922 | Down | -0.2910719582 |
| GSE24585 | Down | -0.2815980619 |
| GSE37065 | Down | -0.2352591703 |
| GSE28863_A1 | Up | 0.3426361782 |
| GSE28863_A2 | Up | 0.4934602030 |
| GSE28863_A3 | Down | -0.6797514041 |
| GSE28863_A4 | Down | -0.0316993946 |
| GSE48662 | Down | -0.6233018479 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-18a-5p | MIMAT0000072 | MIRT031331 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-940 | MIMAT0004983 | MIRT036632 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-130b-5p | MIMAT0004680 | MIRT038314 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040144 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
