HCSGD entry for RBM6
1. General information
| Official gene symbol | RBM6 |
|---|---|
| Entrez ID | 10180 |
| Gene full name | RNA binding motif protein 6 |
| Other gene symbols | 3G2 DEF-3 DEF3 HLC-11 NY-LU-12 g16 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | TAS | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006396 | RNA processing | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9630037954 | 0.0338525816 | 0.9999902473 | 0.3473277929 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2673061896 |
| GSE13712_SHEAR | Up | 0.0612134118 |
| GSE13712_STATIC | Down | -0.2387314854 |
| GSE19018 | Down | -0.7146246249 |
| GSE19899_A1 | Down | -0.1958428867 |
| GSE19899_A2 | Down | -0.3633648727 |
| PubMed_21979375_A1 | Down | -0.6620580281 |
| PubMed_21979375_A2 | Down | -0.6474413480 |
| GSE35957 | Down | -0.8365822926 |
| GSE36640 | Down | -0.2507014542 |
| GSE54402 | Down | -0.0857649239 |
| GSE9593 | Down | -0.3976619753 |
| GSE43922 | Down | -0.0410230437 |
| GSE24585 | Down | -0.0960536905 |
| GSE37065 | Up | 0.0731700450 |
| GSE28863_A1 | Up | 0.0539550137 |
| GSE28863_A2 | Up | 0.0409044322 |
| GSE28863_A3 | Up | 0.1688946458 |
| GSE28863_A4 | Down | -0.0081716581 |
| GSE48662 | Down | -0.3875801961 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT031440 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-221-3p | MIMAT0000278 | MIRT046966 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052467 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
