HCSGD entry for TSFM
1. General information
| Official gene symbol | TSFM |
|---|---|
| Entrez ID | 10102 |
| Gene full name | Ts translation elongation factor, mitochondrial |
| Other gene symbols | EFTS EFTSMT |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003746 | Translation elongation factor activity | IEA | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0006414 | Translational elongation | TAS | biological_process |
| GO:0032784 | Regulation of DNA-templated transcription, elongation | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9226103302 | 0.0996338171 | 0.9999902473 | 0.6040734515 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1943009572 |
| GSE13712_SHEAR | Up | 0.0701181250 |
| GSE13712_STATIC | Up | 0.1567362814 |
| GSE19018 | Down | -0.4917943582 |
| GSE19899_A1 | Down | -0.0092645808 |
| GSE19899_A2 | Down | -0.2806436122 |
| PubMed_21979375_A1 | Down | -0.2200825040 |
| PubMed_21979375_A2 | Down | -0.8834843884 |
| GSE35957 | Up | 0.2325841767 |
| GSE36640 | Up | 0.0371411450 |
| GSE54402 | Down | -0.4332053768 |
| GSE9593 | Down | -0.1084627763 |
| GSE43922 | Up | 0.1364594097 |
| GSE24585 | Down | -0.1970053755 |
| GSE37065 | Down | -0.0434904071 |
| GSE28863_A1 | Down | -0.0267073673 |
| GSE28863_A2 | Down | -0.1562970545 |
| GSE28863_A3 | Down | -0.2170571028 |
| GSE28863_A4 | Up | 0.0840118764 |
| GSE48662 | Down | -0.6574629443 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029759 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036967 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043452 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050350 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
