HCSGD entry for TSPAN3
1. General information
| Official gene symbol | TSPAN3 |
|---|---|
| Entrez ID | 10099 |
| Gene full name | tetraspanin 3 |
| Other gene symbols | TM4-A TM4SF8 TSPAN-3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2428587288 | 0.8785538999 | 0.9299221123 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0997339877 |
| GSE13712_SHEAR | Up | 0.1240990333 |
| GSE13712_STATIC | Up | 0.0672463338 |
| GSE19018 | Up | 0.0132233033 |
| GSE19899_A1 | Down | -0.0611327206 |
| GSE19899_A2 | Down | -0.0545108137 |
| PubMed_21979375_A1 | Down | -0.0648601080 |
| PubMed_21979375_A2 | Down | -0.2819407451 |
| GSE35957 | Up | 0.3755046736 |
| GSE36640 | Up | 0.2996826532 |
| GSE54402 | Down | -0.2814775962 |
| GSE9593 | Up | 0.0198598529 |
| GSE43922 | Up | 0.2301218900 |
| GSE24585 | Up | 0.0347460487 |
| GSE37065 | Up | 0.0840415780 |
| GSE28863_A1 | Up | 0.3459282262 |
| GSE28863_A2 | Up | 0.4269975613 |
| GSE28863_A3 | Down | -0.0211394832 |
| GSE28863_A4 | Up | 0.0497307550 |
| GSE48662 | Up | 0.2471355295 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-197-3p | MIMAT0000227 | MIRT000215 | Microarray//qRT-PCR | Functional MTI (Weak) | 16822819 |
| hsa-miR-197-3p | MIMAT0000227 | MIRT000215 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT020952 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030069 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031979 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031979 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041737 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046454 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7f-5p | MIMAT0000067 | MIRT051380 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052340 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052616 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
