HCSGD entry for ABCF2
1. General information
| Official gene symbol | ABCF2 |
|---|---|
| Entrez ID | 10061 |
| Gene full name | ATP-binding cassette, sub-family F (GCN20), member 2 |
| Other gene symbols | ABC28 EST133090 HUSSY18 M-ABC1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005215 | Transporter activity | TAS | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0005740 | Mitochondrial envelope | TAS | cellular_component |
| GO:0006810 | Transport | TAS | biological_process |
| GO:0016887 | ATPase activity | IEA | molecular_function |
| GO:0043190 | ATP-binding cassette (ABC) transporter complex | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2194702595 | 0.4054535162 | 0.9011976131 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3246447787 |
| GSE13712_SHEAR | Down | -0.0250341735 |
| GSE13712_STATIC | Up | 0.1827458723 |
| GSE19018 | Down | -0.1293082574 |
| GSE19899_A1 | Down | -0.0718274078 |
| GSE19899_A2 | Up | 0.5783544926 |
| PubMed_21979375_A1 | Up | 0.2330063909 |
| PubMed_21979375_A2 | Up | 0.4908150655 |
| GSE35957 | Up | 0.1217494315 |
| GSE36640 | Up | 0.1070790730 |
| GSE54402 | Up | 0.2285009101 |
| GSE9593 | Down | -0.0911963855 |
| GSE43922 | Up | 0.1794843367 |
| GSE24585 | Down | -0.4933145139 |
| GSE37065 | Down | -0.1459331290 |
| GSE28863_A1 | Down | -0.0430588958 |
| GSE28863_A2 | Down | -0.5861251384 |
| GSE28863_A3 | Up | 0.1760489809 |
| GSE28863_A4 | Down | -0.3232876699 |
| GSE48662 | Up | 0.3440447900 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-16-5p | MIMAT0000069 | MIRT001483 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022795 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027088 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-32-5p | MIMAT0000090 | MIRT028324 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-532-3p | MIMAT0004780 | MIRT037919 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041242 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-326 | MIMAT0000756 | MIRT043643 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044699 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045211 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
