HCSGD entry for SEC16A
1. General information
| Official gene symbol | SEC16A |
|---|---|
| Entrez ID | 9919 |
| Gene full name | SEC16 homolog A (S. cerevisiae) |
| Other gene symbols | KIAA0310 RP11-413M3.10 SEC16L p250 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0005829 | Cytosol | IDA | cellular_component |
| GO:0007029 | Endoplasmic reticulum organization | IDA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0048208 | COPII vesicle coating | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0194260514 | 0.9839243570 | 0.3392920372 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1076063375 |
| GSE13712_SHEAR | Up | 0.2813370579 |
| GSE13712_STATIC | Up | 0.2485508873 |
| GSE19018 | Up | 0.0076650591 |
| GSE19899_A1 | Up | 0.4845406349 |
| GSE19899_A2 | Up | 0.3258571522 |
| PubMed_21979375_A1 | Up | 0.6860399582 |
| PubMed_21979375_A2 | Up | 0.8989907188 |
| GSE35957 | Up | 0.3173996678 |
| GSE36640 | Up | 0.2823791605 |
| GSE54402 | Up | 0.3357067606 |
| GSE9593 | Down | -0.0463999183 |
| GSE43922 | Up | 0.2504743425 |
| GSE24585 | Down | -0.0069555086 |
| GSE37065 | Down | -0.1593116739 |
| GSE28863_A1 | Up | 0.7799114111 |
| GSE28863_A2 | Up | 0.7141408953 |
| GSE28863_A3 | Down | -0.1982444262 |
| GSE28863_A4 | Up | 0.0271308210 |
| GSE48662 | Down | -0.0936543273 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT024060 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032445 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-877-5p | MIMAT0004949 | MIRT037222 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-744-5p | MIMAT0004945 | MIRT037659 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040323 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042336 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043334 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-27b-3p | MIMAT0000419 | MIRT046197 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT048866 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-27a-3p | MIMAT0000084 | MIRT050027 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
