HCSGD entry for LRBA
1. General information
| Official gene symbol | LRBA |
|---|---|
| Entrez ID | 987 |
| Gene full name | LPS-responsive vesicle trafficking, beach and anchor containing |
| Other gene symbols | BGL CDC4L CVID8 LAB300 LBA |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005764 | Lysosome | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016023 | Cytoplasmic membrane-bounded vesicle | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3867675582 | 0.0483725124 | 0.9999902473 | 0.4116433560 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1024054285 |
| GSE13712_SHEAR | Down | -0.0775171682 |
| GSE13712_STATIC | Up | 0.3247633488 |
| GSE19018 | Up | 0.4638482913 |
| GSE19899_A1 | Down | -0.3073932259 |
| GSE19899_A2 | Down | -0.6065091619 |
| PubMed_21979375_A1 | Down | -0.7942599258 |
| PubMed_21979375_A2 | Down | -0.9336841417 |
| GSE35957 | Up | 0.0053644743 |
| GSE36640 | Down | -0.2893654284 |
| GSE54402 | Down | -0.6348057228 |
| GSE9593 | Up | 0.4534927308 |
| GSE43922 | Down | -0.3298392335 |
| GSE24585 | Up | 0.3382182092 |
| GSE37065 | Up | 0.0494840465 |
| GSE28863_A1 | Up | 0.3985958838 |
| GSE28863_A2 | Up | 0.5119707042 |
| GSE28863_A3 | Down | -0.6286074633 |
| GSE28863_A4 | Down | -0.3152067520 |
| GSE48662 | Down | -0.2194953846 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1229-3p | MIMAT0005584 | MIRT036310 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-93-3p | MIMAT0004509 | MIRT038890 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-769-5p | MIMAT0003886 | MIRT039203 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040425 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
