HCSGD entry for SNX17

1. General information

Official gene symbolSNX17
Entrez ID9784
Gene full namesorting nexin 17
Other gene symbols
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005102Receptor bindingNASmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005737CytoplasmIDAcellular_component
GO:0005768EndosomeIDA IEAcellular_component
GO:0005769Early endosomeIDAcellular_component
GO:0005794Golgi apparatusIDAcellular_component
GO:0005829CytosolIDAcellular_component
GO:0006707Cholesterol catabolic processICbiological_process
GO:0006886Intracellular protein transportNASbiological_process
GO:0006898Receptor-mediated endocytosisIEAbiological_process
GO:0007154Cell communicationIEAbiological_process
GO:0007165Signal transductionIEAbiological_process
GO:0008022Protein C-terminus bindingIPImolecular_function
GO:0010008Endosome membraneIDAcellular_component
GO:0016020MembraneNAScellular_component
GO:0016023Cytoplasmic membrane-bounded vesicleIDAcellular_component
GO:0016197Endosomal transportNASbiological_process
GO:0030100Regulation of endocytosisNASbiological_process
GO:0030659Cytoplasmic vesicle membraneIEAcellular_component
GO:0035091Phosphatidylinositol bindingIDA IEAmolecular_function
GO:0043231Intracellular membrane-bounded organelleIDAcellular_component
GO:0043234Protein complexIDAcellular_component
GO:0050750Low-density lipoprotein particle receptor bindingIDAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.96462276130.02498146350.99999024730.3048180222

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.2299097513
GSE13712_SHEARDown-0.2008958957
GSE13712_STATICDown-0.0885014803
GSE19018Up0.0389193097
GSE19899_A1Down-0.9900170997
GSE19899_A2Down-0.2165579972
PubMed_21979375_A1Down-0.3257855666
PubMed_21979375_A2Down-0.3345221964
GSE35957Down-0.0325428302
GSE36640Up0.1230618853
GSE54402Down-0.1543641468
GSE9593Up0.1451949814
GSE43922Down-0.4604633214
GSE24585Down-0.4816021990
GSE37065Down-0.3220895379
GSE28863_A1Up0.1016718981
GSE28863_A2Up0.0167386601
GSE28863_A3Down-0.7870939200
GSE28863_A4Down-0.1994381473
GSE48662Up0.0280794323

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-124-3pMIMAT0000422MIRT022223MicroarrayFunctional MTI (Weak)18668037
hsa-miR-18a-3pMIMAT0002891MIRT040825CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.