HCSGD entry for ATG13
1. General information
| Official gene symbol | ATG13 |
|---|---|
| Entrez ID | 9776 |
| Gene full name | autophagy related 13 |
| Other gene symbols | KIAA0652 PARATARG8 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000045 | Autophagic vacuole assembly | IMP | biological_process |
| GO:0000407 | Pre-autophagosomal structure | IEA ISS | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0019901 | Protein kinase binding | IPI | molecular_function |
| GO:0070969 | ULK1-ATG13-FIP200 complex | IEA IPI | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0171287223 | 0.9615664184 | 0.3224007138 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2569792322 |
| GSE13712_SHEAR | Up | 0.1425087221 |
| GSE13712_STATIC | Up | 0.0540963397 |
| GSE19018 | Up | 0.1173808180 |
| GSE19899_A1 | Up | 0.1281555846 |
| GSE19899_A2 | Up | 0.6521601320 |
| PubMed_21979375_A1 | Up | 1.2888360265 |
| PubMed_21979375_A2 | Up | 1.6969092670 |
| GSE35957 | Up | 0.1145247460 |
| GSE36640 | Up | 0.3487729847 |
| GSE54402 | Up | 0.4879483490 |
| GSE9593 | Up | 0.4158427737 |
| GSE43922 | Up | 0.1578850843 |
| GSE24585 | Up | 0.4361684170 |
| GSE37065 | Down | -0.0296562588 |
| GSE28863_A1 | Down | -0.1169591613 |
| GSE28863_A2 | Down | -0.2093149456 |
| GSE28863_A3 | Down | -0.3529970535 |
| GSE28863_A4 | Down | -0.1148292398 |
| GSE48662 | Up | 0.2780156181 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-10b-5p | MIMAT0000254 | MIRT047462 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 21490424 | In addition, we found that Atg13 is gradually rephosphorylated during prolonged nitrogen starvation, and the kinase activity of Atg1 is required for Atg13 rephosphorylation |
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