HCSGD entry for SEC24C
1. General information
| Official gene symbol | SEC24C |
|---|---|
| Entrez ID | 9632 |
| Gene full name | SEC24 family, member C (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0002474 | Antigen processing and presentation of peptide antigen via MHC class I | TAS | biological_process |
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | TAS | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IEA NAS TAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0012507 | ER to Golgi transport vesicle membrane | TAS | cellular_component |
| GO:0018279 | Protein N-linked glycosylation via asparagine | TAS | biological_process |
| GO:0019886 | Antigen processing and presentation of exogenous peptide antigen via MHC class II | TAS | biological_process |
| GO:0030127 | COPII vesicle coat | IEA NAS | cellular_component |
| GO:0043231 | Intracellular membrane-bounded organelle | IDA | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0048208 | COPII vesicle coating | TAS | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0473960640 | 0.9453339121 | 0.4813989587 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1261315060 |
| GSE13712_SHEAR | Down | -0.0814536597 |
| GSE13712_STATIC | Up | 0.1130799345 |
| GSE19018 | Down | -0.1330520133 |
| GSE19899_A1 | Up | 0.5948007089 |
| GSE19899_A2 | Up | 0.3495669404 |
| PubMed_21979375_A1 | Up | 0.0142178650 |
| PubMed_21979375_A2 | Up | 1.4266903193 |
| GSE35957 | Down | -0.1651940416 |
| GSE36640 | Up | 0.2664220057 |
| GSE54402 | Up | 0.4315660794 |
| GSE9593 | Down | -0.3462002005 |
| GSE43922 | Up | 0.2261589350 |
| GSE24585 | Up | 0.0680300548 |
| GSE37065 | Down | -0.0261347761 |
| GSE28863_A1 | Up | 0.5211507101 |
| GSE28863_A2 | Up | 0.2761767036 |
| GSE28863_A3 | Down | -0.3062042934 |
| GSE28863_A4 | Up | 0.0137618395 |
| GSE48662 | Up | 0.1979113385 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018005 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-375 | MIMAT0000728 | MIRT019799 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-877-5p | MIMAT0004949 | MIRT037231 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039678 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-222-3p | MIMAT0000279 | MIRT046743 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-181b-5p | MIMAT0000257 | MIRT047285 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
