HCSGD entry for SOX13
1. General information
| Official gene symbol | SOX13 |
|---|---|
| Entrez ID | 9580 |
| Gene full name | SRY (sex determining region Y)-box 13 |
| Other gene symbols | ICA12 Sox-13 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA ISS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0009653 | Anatomical structure morphogenesis | TAS | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IEA ISS | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4665572281 | 0.7062742601 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0307941002 |
| GSE13712_SHEAR | Down | -0.3316047443 |
| GSE13712_STATIC | Down | -0.2769135074 |
| GSE19018 | Up | 0.1789004097 |
| GSE19899_A1 | Down | -0.0051743568 |
| GSE19899_A2 | Up | 0.1080575615 |
| PubMed_21979375_A1 | Up | 0.3606366446 |
| PubMed_21979375_A2 | Up | 0.4454294159 |
| GSE35957 | Up | 0.1017395390 |
| GSE36640 | Down | -0.0442578935 |
| GSE54402 | Down | -0.1098048168 |
| GSE9593 | Down | -0.1719193123 |
| GSE43922 | Up | 0.0590021582 |
| GSE24585 | Up | 0.0794557958 |
| GSE37065 | Up | 0.0771445272 |
| GSE28863_A1 | Down | -0.0086018710 |
| GSE28863_A2 | Up | 0.0082214149 |
| GSE28863_A3 | Up | 0.1399834544 |
| GSE28863_A4 | Down | -0.0947775901 |
| GSE48662 | Up | 0.4716904696 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016882 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052343 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
