HCSGD entry for VPS26A
1. General information
| Official gene symbol | VPS26A |
|---|---|
| Entrez ID | 9559 |
| Gene full name | vacuolar protein sorting 26 homolog A (S. pombe) |
| Other gene symbols | HB58 Hbeta58 PEP8A VPS26 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005768 | Endosome | IDA IEA | cellular_component |
| GO:0005829 | Cytosol | IDA TAS | cellular_component |
| GO:0007034 | Vacuolar transport | IEA | biological_process |
| GO:0008565 | Protein transporter activity | NAS | molecular_function |
| GO:0010008 | Endosome membrane | IEA | cellular_component |
| GO:0030904 | Retromer complex | IEA | cellular_component |
| GO:0031982 | Vesicle | IDA | cellular_component |
| GO:0042147 | Retrograde transport, endosome to Golgi | IEA NAS | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4944339349 | 0.8511973215 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1518880483 |
| GSE13712_SHEAR | Up | 0.3123359482 |
| GSE13712_STATIC | Up | 0.1212459625 |
| GSE19018 | Down | -0.0619470159 |
| GSE19899_A1 | Up | 0.0195121869 |
| GSE19899_A2 | Down | -0.0292831247 |
| PubMed_21979375_A1 | Down | -0.1298841060 |
| PubMed_21979375_A2 | Down | -0.0342658064 |
| GSE35957 | Down | -0.0793364625 |
| GSE36640 | Up | 0.0153770452 |
| GSE54402 | Up | 0.0971652493 |
| GSE9593 | Up | 0.2340820174 |
| GSE43922 | Down | -0.0625648681 |
| GSE24585 | Up | 0.1330163079 |
| GSE37065 | Up | 0.0401903999 |
| GSE28863_A1 | Up | 0.0429943241 |
| GSE28863_A2 | Up | 0.3261290433 |
| GSE28863_A3 | Down | -0.1949321103 |
| GSE28863_A4 | Up | 0.1710234274 |
| GSE48662 | Down | -0.2368155522 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | MIRT004448 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025885 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-7-5p | MIMAT0000252 | MIRT025885 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT031005 | Microarray | Functional MTI (Weak) | 18591254 |
Entries Per Page
Displaying Page of
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-373-3p | MIMAT0000726 | NA | hsa-miR-373 | 15685193 |
Entries Per Page
Displaying Page of
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 25412306 | We identified 107 proteins that could be potential markers of senescence and validated 10 of them (DEP1, NTAL, EBP50, STX4, VAMP3, ARMX3, B2MG, LANCL1, VPS26A and PLD3) |
Entries Per Page
Displaying Page of
