HCSGD entry for RAB3D
1. General information
| Official gene symbol | RAB3D |
|---|---|
| Entrez ID | 9545 |
| Gene full name | RAB3D, member RAS oncogene family |
| Other gene symbols | D2-2 GOV RAB16 RAD3D |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003924 | GTPase activity | TAS | molecular_function |
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005739 | Mitochondrion | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0006184 | GTP catabolic process | TAS | biological_process |
| GO:0006887 | Exocytosis | IEA | biological_process |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0017157 | Regulation of exocytosis | IEA | biological_process |
| GO:0018125 | Peptidyl-cysteine methylation | IEA | biological_process |
| GO:0030133 | Transport vesicle | IEA | cellular_component |
| GO:0042588 | Zymogen granule | IEA | cellular_component |
| GO:0051020 | GTPase binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1196897724 | 0.8831270696 | 0.7084290468 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3592524659 |
| GSE13712_SHEAR | Down | -0.3319005892 |
| GSE13712_STATIC | Up | 0.0299660234 |
| GSE19018 | Down | -0.0272152024 |
| GSE19899_A1 | Up | 0.1701720583 |
| GSE19899_A2 | Up | 0.8406842588 |
| PubMed_21979375_A1 | Up | 0.4472038792 |
| PubMed_21979375_A2 | Up | 0.8258236450 |
| GSE35957 | Down | -0.1322101828 |
| GSE36640 | Up | 0.2575903075 |
| GSE54402 | Up | 0.3068537510 |
| GSE9593 | Up | 0.0796088681 |
| GSE43922 | Up | 0.3722490929 |
| GSE24585 | Up | 0.1399522310 |
| GSE37065 | Up | 0.0736111166 |
| GSE28863_A1 | Up | 0.1782299080 |
| GSE28863_A2 | Up | 0.0674150592 |
| GSE28863_A3 | Down | -0.1352568425 |
| GSE28863_A4 | Down | -0.0654142039 |
| GSE48662 | Down | -0.0951928597 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018959 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-375 | MIMAT0000728 | MIRT020003 | Microarray | Functional MTI (Weak) | 20215506 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
