HCSGD entry for CHST3
1. General information
| Official gene symbol | CHST3 |
|---|---|
| Entrez ID | 9469 |
| Gene full name | carbohydrate (chondroitin 6) sulfotransferase 3 |
| Other gene symbols | C6ST C6ST1 HSD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0006790 | Sulfur compound metabolic process | IDA | biological_process |
| GO:0008146 | Sulfotransferase activity | TAS | molecular_function |
| GO:0008459 | Chondroitin 6-sulfotransferase activity | IDA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0030206 | Chondroitin sulfate biosynthetic process | IDA TAS | biological_process |
| GO:0043029 | T cell homeostasis | IEA | biological_process |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
| GO:0050698 | Proteoglycan sulfotransferase activity | IEA | molecular_function |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0869704077 | 0.2991813343 | 0.6187890541 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0307434934 |
| GSE13712_SHEAR | Down | -0.5949251530 |
| GSE13712_STATIC | Down | -0.2909785363 |
| GSE19018 | Down | -0.2877326598 |
| GSE19899_A1 | Down | -0.1016801080 |
| GSE19899_A2 | Down | -0.4757572868 |
| PubMed_21979375_A1 | Up | 0.3621013231 |
| PubMed_21979375_A2 | Up | 0.9264214955 |
| GSE35957 | Down | -0.3252015290 |
| GSE36640 | Up | 1.3119015397 |
| GSE54402 | Down | -0.3601462079 |
| GSE9593 | Up | 0.0813661317 |
| GSE43922 | Up | 0.1896505981 |
| GSE24585 | Down | -0.2061067752 |
| GSE37065 | Down | -0.0783724261 |
| GSE28863_A1 | Up | 0.8971029977 |
| GSE28863_A2 | Up | 0.4974374597 |
| GSE28863_A3 | Up | 0.3689202323 |
| GSE28863_A4 | Down | -0.0138188827 |
| GSE48662 | Up | 0.2256453166 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-122-5p | MIMAT0000421 | MIRT023379 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027845 | Microarray | Functional MTI (Weak) | 19088304 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 18024225 | Gene expression of types I, II, and VI collagen, aggrecan, and chondroitin-6-sulfotransferase in the human annulus: in situ hybridization findings |
| 18024225 | PURPOSE: To determine the percentage and patterns of gene expression for types I, II, and VI collagen, aggrecan, and chondroitin-6-sulfotransferase in the human annulus |
| 18024225 | OUTCOME MEASURES: The percentages of cells in the human annulus expressing type I, II, and VI collagen, aggrecan, and chondroitin-6-sulfotransferase |
| 18024225 | 7% chondroitin-6-sulfotransferase |
Entries Per Page
Displaying Page of
