HCSGD entry for TRIP13
1. General information
| Official gene symbol | TRIP13 |
|---|---|
| Entrez ID | 9319 |
| Gene full name | thyroid hormone receptor interactor 13 |
| Other gene symbols | 16E1BP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001556 | Oocyte maturation | IEA | biological_process |
| GO:0001673 | Male germ cell nucleus | IEA | cellular_component |
| GO:0003712 | Transcription cofactor activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA NAS | molecular_function |
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0006302 | Double-strand break repair | ISS | biological_process |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0007130 | Synaptonemal complex assembly | ISS | biological_process |
| GO:0007131 | Reciprocal meiotic recombination | ISS | biological_process |
| GO:0007141 | Male meiosis I | IEA | biological_process |
| GO:0007144 | Female meiosis I | IEA | biological_process |
| GO:0007283 | Spermatogenesis | ISS | biological_process |
| GO:0007286 | Spermatid development | IEA | biological_process |
| GO:0017111 | Nucleoside-triphosphatase activity | IEA | molecular_function |
| GO:0042802 | Identical protein binding | IEA | molecular_function |
| GO:0048477 | Oogenesis | ISS | biological_process |
| GO:2001141 | Regulation of RNA biosynthetic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9175194408 | 0.0000343110 | 0.9999902473 | 0.0102625000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -1.6803306482 |
| GSE13712_SHEAR | Up | 0.5969555858 |
| GSE13712_STATIC | Up | 0.0184334422 |
| GSE19018 | Down | -0.1118816869 |
| GSE19899_A1 | Down | -1.9150309066 |
| GSE19899_A2 | Down | -2.5474152909 |
| PubMed_21979375_A1 | Down | -1.2956453009 |
| PubMed_21979375_A2 | Down | -4.1612763791 |
| GSE35957 | Down | -4.0029196815 |
| GSE36640 | Down | -4.7024897950 |
| GSE54402 | Down | -0.5559931375 |
| GSE9593 | Down | -1.3352612451 |
| GSE43922 | Down | -1.4840090098 |
| GSE24585 | Down | -0.2590219596 |
| GSE37065 | Down | -0.7784213745 |
| GSE28863_A1 | Down | -0.2176985767 |
| GSE28863_A2 | Up | 1.4694699663 |
| GSE28863_A3 | Down | -0.5330740438 |
| GSE28863_A4 | Up | 0.0737827017 |
| GSE48662 | Down | -1.2840014756 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT001491 | pSILAC//Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-155-5p | MIMAT0000646 | MIRT001491 | Reporter assay;Other | Functional MTI | 20584899 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016349 | Microarray | Functional MTI (Weak) | 20304954 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024619 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026520 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
