HCSGD entry for GPR56
1. General information
| Official gene symbol | GPR56 |
|---|---|
| Entrez ID | 9289 |
| Gene full name | G protein-coupled receptor 56 |
| Other gene symbols | BFPP TM7LN4 TM7XN1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001525 | Angiogenesis | IDA | biological_process |
| GO:0004930 | G-protein coupled receptor activity | IEA ISS | molecular_function |
| GO:0005518 | Collagen binding | IEA ISS | molecular_function |
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007155 | Cell adhesion | IEA | biological_process |
| GO:0007186 | G-protein coupled receptor signaling pathway | TAS | biological_process |
| GO:0007218 | Neuropeptide signaling pathway | IEA | biological_process |
| GO:0007266 | Rho protein signal transduction | IDA | biological_process |
| GO:0007267 | Cell-cell signaling | TAS | biological_process |
| GO:0007420 | Brain development | IMP | biological_process |
| GO:0008285 | Negative regulation of cell proliferation | IDA | biological_process |
| GO:0010573 | Vascular endothelial growth factor production | IDA | biological_process |
| GO:0016021 | Integral component of membrane | IEA TAS | cellular_component |
| GO:0021801 | Cerebral cortex radial glia guided migration | ISS | biological_process |
| GO:0021819 | Layer formation in cerebral cortex | IEA ISS | biological_process |
| GO:0035025 | Positive regulation of Rho protein signal transduction | IEA ISS | biological_process |
| GO:0045785 | Positive regulation of cell adhesion | IDA | biological_process |
| GO:0050840 | Extracellular matrix binding | IEA ISS | molecular_function |
| GO:0070528 | Protein kinase C signaling | IDA | biological_process |
| GO:0097451 | Glial limiting end-foot | IEA ISS | cellular_component |
| GO:2001223 | Negative regulation of neuron migration | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0167021580 | 0.7214702443 | 0.3190257620 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.5491218486 |
| GSE13712_SHEAR | Up | 0.5372756279 |
| GSE13712_STATIC | Up | 0.5580554509 |
| GSE19018 | Up | 0.0062926770 |
| GSE19899_A1 | Up | 0.0199271766 |
| GSE19899_A2 | Up | 0.4403407804 |
| PubMed_21979375_A1 | Up | 0.4723059130 |
| PubMed_21979375_A2 | Up | 0.5426355233 |
| GSE35957 | Down | -0.3805853555 |
| GSE36640 | Down | -0.2414057804 |
| GSE54402 | Up | 0.4364858274 |
| GSE9593 | Down | -0.3675030877 |
| GSE43922 | Up | 0.1256581076 |
| GSE24585 | Up | 0.0317343662 |
| GSE37065 | Up | 1.1871842981 |
| GSE28863_A1 | Up | 0.0330953499 |
| GSE28863_A2 | Up | 0.1159138561 |
| GSE28863_A3 | Up | 0.3576850068 |
| GSE28863_A4 | Up | 0.2379521322 |
| GSE48662 | Down | -0.7050811127 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT001629 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027574 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
