HCSGD entry for CHMP4C
1. General information
| Official gene symbol | CHMP4C |
|---|---|
| Entrez ID | 92421 |
| Gene full name | charged multivesicular body protein 4C |
| Other gene symbols | SNF7-3 Shax3 VPS32C |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0016197 | Endosomal transport | TAS | biological_process |
| GO:0030496 | Midbody | IDA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1281110292 | 0.5292026899 | 0.7276673284 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6505514450 |
| GSE13712_SHEAR | Down | -0.3612263764 |
| GSE13712_STATIC | Down | -0.2142995140 |
| GSE19018 | Up | 0.1854633348 |
| GSE19899_A1 | Up | 0.0249244598 |
| GSE19899_A2 | Up | 0.3956837701 |
| PubMed_21979375_A1 | Up | 1.1799975156 |
| PubMed_21979375_A2 | Up | 0.5872835949 |
| GSE35957 | Up | 0.1564695809 |
| GSE36640 | Up | 0.2301305442 |
| GSE54402 | Down | -0.1496245329 |
| GSE9593 | Down | -0.0420618640 |
| GSE43922 | Up | 0.0136895653 |
| GSE24585 | Down | -0.3070072691 |
| GSE37065 | Up | 0.0193646628 |
| GSE28863_A1 | Up | 0.3551086278 |
| GSE28863_A2 | Up | 0.1016171594 |
| GSE28863_A3 | Up | 0.2100650284 |
| GSE28863_A4 | Down | -0.5928247570 |
| GSE48662 | Up | 0.0997306218 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30c-2-3p | MIMAT0004550 | MIRT038687 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
