HCSGD entry for CAPN13
1. General information
| Official gene symbol | CAPN13 |
|---|---|
| Entrez ID | 92291 |
| Gene full name | calpain 13 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004198 | Calcium-dependent cysteine-type endopeptidase activity | IEA | molecular_function |
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0006508 | Proteolysis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8427907982 | 0.8383431291 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0403386057 |
| GSE13712_SHEAR | Up | 0.0255206664 |
| GSE13712_STATIC | Down | -0.0198368654 |
| GSE19018 | Up | 0.0492720660 |
| GSE19899_A1 | Up | 0.0681610186 |
| GSE19899_A2 | Up | 0.0850874103 |
| PubMed_21979375_A1 | Down | -0.0242558243 |
| PubMed_21979375_A2 | Down | -0.0592118053 |
| GSE35957 | Up | 0.1717771512 |
| GSE36640 | Up | 0.1278553670 |
| GSE54402 | Down | -0.0250056256 |
| GSE9593 | Up | 0.1687642364 |
| GSE43922 | Down | -0.0221465907 |
| GSE24585 | Down | -0.1832625894 |
| GSE37065 | Down | -0.0538072895 |
| GSE28863_A1 | Down | -0.0049424385 |
| GSE28863_A2 | Up | 0.0691944232 |
| GSE28863_A3 | Up | 0.0602723468 |
| GSE28863_A4 | Up | 0.0439630027 |
| GSE48662 | Up | 0.0034508492 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018063 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019322 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
