HCSGD entry for SCAF11
1. General information
| Official gene symbol | SCAF11 |
|---|---|
| Entrez ID | 9169 |
| Gene full name | SR-related CTD-associated factor 11 |
| Other gene symbols | CASP11 SFRS2IP SIP1 SRRP129 SRSF2IP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000245 | Spliceosomal complex assembly | IDA | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | IDA | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006397 | MRNA processing | TAS | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008380 | RNA splicing | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8798153870 | 0.1669596748 | 0.9999902473 | 0.7898943576 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1068586866 |
| GSE13712_SHEAR | Up | 0.0532098707 |
| GSE13712_STATIC | Down | -0.1081471673 |
| GSE19018 | Down | -0.1915822353 |
| GSE19899_A1 | Up | 0.0078789832 |
| GSE19899_A2 | Down | -0.1459735412 |
| PubMed_21979375_A1 | Down | -0.1260583610 |
| PubMed_21979375_A2 | Up | 0.0424731889 |
| GSE35957 | Down | -0.0432642273 |
| GSE36640 | Up | 0.0595202761 |
| GSE54402 | Down | -0.1409674301 |
| GSE9593 | Down | -0.2259108660 |
| GSE43922 | Down | -0.0913585513 |
| GSE24585 | Up | 0.2682539902 |
| GSE37065 | Up | 0.0001480816 |
| GSE28863_A1 | Up | 0.0242034761 |
| GSE28863_A2 | Down | -0.1638818139 |
| GSE28863_A3 | Down | -0.9252694428 |
| GSE28863_A4 | Up | 0.0679866201 |
| GSE48662 | Up | 0.2853434614 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-29c-3p | MIMAT0000681 | MIRT020370 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022456 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-1 | MIMAT0000416 | MIRT023662 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030721 | Microarray | Functional MTI (Weak) | 18591254 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
