HCSGD entry for SAMD1
1. General information
| Official gene symbol | SAMD1 |
|---|---|
| Entrez ID | 90378 |
| Gene full name | sterile alpha motif domain containing 1 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2990996391 | 0.6997493750 | 0.9982228068 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1356580037 |
| GSE13712_SHEAR | Down | -0.3731433280 |
| GSE13712_STATIC | Down | -0.3435228296 |
| GSE19018 | Down | -0.0756466027 |
| GSE19899_A1 | Up | 0.0623836336 |
| GSE19899_A2 | Up | 0.3108234244 |
| PubMed_21979375_A1 | Up | 0.3994690118 |
| PubMed_21979375_A2 | Up | 0.4650438973 |
| GSE35957 | Down | -0.1024776618 |
| GSE36640 | Down | -0.3148257408 |
| GSE54402 | Up | 0.2376726223 |
| GSE9593 | Down | -0.1578995644 |
| GSE43922 | Up | 0.2409173109 |
| GSE24585 | Down | -0.1294391461 |
| GSE37065 | Up | 0.0169646775 |
| GSE28863_A1 | Up | 0.2230240899 |
| GSE28863_A2 | Up | 0.2242334815 |
| GSE28863_A3 | Up | 0.1568095211 |
| GSE28863_A4 | Up | 0.0131494050 |
| GSE48662 | Up | 0.2561564187 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031219 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
