HCSGD entry for SEC16B

1. General information

Official gene symbolSEC16B
Entrez ID89866
Gene full nameSEC16 homolog B (S. cerevisiae)
Other gene symbolsLZTR2 PGPR-p117 RGPR SEC16S
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000139Golgi membraneIEAcellular_component
GO:0005789Endoplasmic reticulum membraneIEAcellular_component
GO:0007029Endoplasmic reticulum organizationIDAbiological_process
GO:0007031Peroxisome organizationIDAbiological_process
GO:0010628Positive regulation of gene expressionIMPbiological_process
GO:0015031Protein transportIEAbiological_process
GO:0016559Peroxisome fissionIMPbiological_process
GO:0043231Intracellular membrane-bounded organelleIDAcellular_component
GO:0048208COPII vesicle coatingIEAbiological_process
GO:0070863Positive regulation of protein exit from endoplasmic reticulumIMPbiological_process
GO:0070972Protein localization to endoplasmic reticulumIDAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.61962684930.78296866000.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0171050166
GSE13712_SHEARUp0.0346881254
GSE13712_STATICUp0.0864204500
GSE19018Up0.0525276060
GSE19899_A1Up0.2076440007
GSE19899_A2Down-0.0924331654
PubMed_21979375_A1Down-0.1121891479
PubMed_21979375_A2Up0.0621343216
GSE35957Down-0.0190799492
GSE36640Up0.1226402765
GSE54402Down-0.1643262940
GSE9593Up0.1933180898
GSE43922Up0.0240021055
GSE24585Up0.1037740077
GSE37065Down-0.1655962087
GSE28863_A1Up0.0384214894
GSE28863_A2Up0.5562319198
GSE28863_A3Down-0.1112520143
GSE28863_A4Down-0.1055335514
GSE48662Down-0.1871792518

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT017884MicroarrayFunctional MTI (Weak)18185580
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.