HCSGD entry for PRPF4B
1. General information
| Official gene symbol | PRPF4B |
|---|---|
| Entrez ID | 8899 |
| Gene full name | PRP4 pre-mRNA processing factor 4 homolog B (yeast) |
| Other gene symbols | PR4H PRP4 PRP4H PRP4K dJ1013A10.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | IC | biological_process |
| GO:0004672 | Protein kinase activity | TAS | molecular_function |
| GO:0004674 | Protein serine/threonine kinase activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005694 | Chromosome | IEA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006468 | Protein phosphorylation | TAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7979785115 | 0.3377326849 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0153819347 |
| GSE13712_SHEAR | Up | 0.0626059158 |
| GSE13712_STATIC | Down | -0.1355709342 |
| GSE19018 | Down | -0.6357267853 |
| GSE19899_A1 | Up | 0.0008641505 |
| GSE19899_A2 | Up | 0.1503251922 |
| PubMed_21979375_A1 | Up | 0.0298974482 |
| PubMed_21979375_A2 | Down | -0.0760625710 |
| GSE35957 | Down | -0.1213927320 |
| GSE36640 | Down | -0.2699079108 |
| GSE54402 | Down | -0.0221461581 |
| GSE9593 | Down | -0.5019975691 |
| GSE43922 | Up | 0.0462514993 |
| GSE24585 | Down | -0.1052756269 |
| GSE37065 | Up | 0.1976141959 |
| GSE28863_A1 | Up | 0.1155407149 |
| GSE28863_A2 | Up | 0.5446734681 |
| GSE28863_A3 | Up | 0.0483984539 |
| GSE28863_A4 | Down | -0.0201055762 |
| GSE48662 | Down | -0.1292366067 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028664 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
