HCSGD entry for LRRCC1
1. General information
| Official gene symbol | LRRCC1 |
|---|---|
| Entrez ID | 85444 |
| Gene full name | leucine rich repeat and coiled-coil centrosomal protein 1 |
| Other gene symbols | CLERC SAP2 VFL1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005813 | Centrosome | IDA | cellular_component |
| GO:0005814 | Centriole | IEA | cellular_component |
| GO:0007067 | Mitosis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9683794423 | 0.0017176247 | 0.9999902473 | 0.0794414035 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2361799865 |
| GSE13712_SHEAR | Down | -0.2003301727 |
| GSE13712_STATIC | Down | -0.4435309376 |
| GSE19018 | Down | -0.3678238229 |
| GSE19899_A1 | Down | -0.1815975210 |
| GSE19899_A2 | Down | -2.2914706020 |
| PubMed_21979375_A1 | Down | -1.6536912908 |
| PubMed_21979375_A2 | Down | -1.8962485042 |
| GSE35957 | Down | -0.5849619178 |
| GSE36640 | Down | -1.5163458781 |
| GSE54402 | Down | -0.9051042504 |
| GSE9593 | Down | -0.2059901785 |
| GSE43922 | Down | -1.9474691771 |
| GSE24585 | Up | 0.4766718414 |
| GSE37065 | Down | -0.0005194115 |
| GSE28863_A1 | Up | 0.3157006662 |
| GSE28863_A2 | Up | 0.7075053703 |
| GSE28863_A3 | Down | -0.2756557072 |
| GSE28863_A4 | Down | -0.1279721340 |
| GSE48662 | Down | -0.4095209556 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024691 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026773 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
