HCSGD entry for ZIC5
1. General information
| Official gene symbol | ZIC5 |
|---|---|
| Entrez ID | 85416 |
| Gene full name | Zic family member 5 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001843 | Neural tube closure | IEA | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0030154 | Cell differentiation | IEA | biological_process |
| GO:0030900 | Forebrain development | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3102349265 | 0.9104699821 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0370078656 |
| GSE13712_SHEAR | Down | -0.1648565515 |
| GSE13712_STATIC | Up | 0.0108725227 |
| GSE19018 | Down | -0.0302769219 |
| GSE19899_A1 | Up | 0.0680562809 |
| GSE19899_A2 | Up | 0.1506613970 |
| PubMed_21979375_A1 | Up | 0.0527880157 |
| PubMed_21979375_A2 | Up | 0.2710897667 |
| GSE35957 | Up | 0.3253832688 |
| GSE36640 | Down | -0.0036008058 |
| GSE54402 | Down | -0.0485166648 |
| GSE9593 | Up | 0.0966386315 |
| GSE43922 | Up | 0.3253711042 |
| GSE24585 | Up | 0.4061142774 |
| GSE37065 | Down | -0.1183318412 |
| GSE28863_A1 | Up | 0.0645103325 |
| GSE28863_A2 | Down | -0.0632632602 |
| GSE28863_A3 | Up | 0.1436679612 |
| GSE28863_A4 | Down | -0.0369600033 |
| GSE48662 | Up | 0.0771164937 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-340-5p | MIMAT0004692 | MIRT019534 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT021085 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT021906 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-23b-3p | MIMAT0000418 | MIRT023467 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024611 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026278 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-93-5p | MIMAT0000093 | MIRT027950 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043243 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
