HCSGD entry for SYDE1
1. General information
| Official gene symbol | SYDE1 |
|---|---|
| Entrez ID | 85360 |
| Gene full name | synapse defective 1, Rho GTPase, homolog 1 (C. elegans) |
| Other gene symbols | 7h3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005100 | Rho GTPase activator activity | ISS | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0007165 | Signal transduction | IEA | biological_process |
| GO:0007264 | Small GTPase mediated signal transduction | TAS | biological_process |
| GO:0032862 | Activation of Rho GTPase activity | ISS | biological_process |
| GO:0051056 | Regulation of small GTPase mediated signal transduction | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8581125641 | 0.1162499107 | 0.9999902473 | 0.6536342802 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2388172455 |
| GSE13712_SHEAR | Down | -0.0042648340 |
| GSE13712_STATIC | Down | -0.0633416163 |
| GSE19018 | Down | -0.0528877154 |
| GSE19899_A1 | Down | -0.1005721733 |
| GSE19899_A2 | Up | 0.5417353702 |
| PubMed_21979375_A1 | Down | -0.0199675125 |
| PubMed_21979375_A2 | Up | 0.3763555746 |
| GSE35957 | Up | 0.2880939824 |
| GSE36640 | Down | -0.1169511588 |
| GSE54402 | Up | 0.0415076797 |
| GSE9593 | Down | -0.0395647071 |
| GSE43922 | Up | 0.0019589741 |
| GSE24585 | Down | -0.5332088855 |
| GSE37065 | Down | -0.4168999626 |
| GSE28863_A1 | Down | -0.0188805964 |
| GSE28863_A2 | Down | -0.1405966989 |
| GSE28863_A3 | Down | -0.1485529869 |
| GSE28863_A4 | Down | -0.1691595465 |
| GSE48662 | Down | -0.0797049452 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
