HCSGD entry for PPFIA1
1. General information
| Official gene symbol | PPFIA1 |
|---|---|
| Entrez ID | 8500 |
| Gene full name | protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 |
| Other gene symbols | LIP.1 LIP1 LIPRIN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004871 | Signal transducer activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0007160 | Cell-matrix adhesion | TAS | biological_process |
| GO:0007165 | Signal transduction | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0538012917 | 0.9699967212 | 0.5053903640 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0605293105 |
| GSE13712_SHEAR | Down | -0.1821313092 |
| GSE13712_STATIC | Down | -0.0134202243 |
| GSE19018 | Down | -0.1605478691 |
| GSE19899_A1 | Down | -0.0643652210 |
| GSE19899_A2 | Up | 0.6599404552 |
| PubMed_21979375_A1 | Up | 0.1373707082 |
| PubMed_21979375_A2 | Up | 0.4911794521 |
| GSE35957 | Up | 0.4628348883 |
| GSE36640 | Up | 0.2955591207 |
| GSE54402 | Up | 0.5414224936 |
| GSE9593 | Up | 0.2469289518 |
| GSE43922 | Down | -0.0282905368 |
| GSE24585 | Up | 0.1139405125 |
| GSE37065 | Up | 0.0761993933 |
| GSE28863_A1 | Up | 0.6322307786 |
| GSE28863_A2 | Up | 0.4785690435 |
| GSE28863_A3 | Down | -0.0210182731 |
| GSE28863_A4 | Up | 0.0844736971 |
| GSE48662 | Up | 0.0440710010 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040944 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-3p | MIMAT0000762 | MIRT042881 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
