HCSGD entry for ATG4D
1. General information
| Official gene symbol | ATG4D |
|---|---|
| Entrez ID | 84971 |
| Gene full name | autophagy related 4D, cysteine peptidase |
| Other gene symbols | APG4-D APG4D AUTL4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004197 | Cysteine-type endopeptidase activity | ISS | molecular_function |
| GO:0005737 | Cytoplasm | IEA ISS | cellular_component |
| GO:0005759 | Mitochondrial matrix | IEA | cellular_component |
| GO:0006508 | Proteolysis | IEA | biological_process |
| GO:0006914 | Autophagy | IEA | biological_process |
| GO:0006915 | Apoptotic process | IEA | biological_process |
| GO:0008234 | Cysteine-type peptidase activity | IEA | molecular_function |
| GO:0015031 | Protein transport | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0602936705 | 0.8250172942 | 0.5320536528 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0059824309 |
| GSE13712_SHEAR | Up | 0.0026004206 |
| GSE13712_STATIC | Up | 0.0844062841 |
| GSE19018 | Down | -0.2173436761 |
| GSE19899_A1 | Up | 0.1460420890 |
| GSE19899_A2 | Up | 1.1054173907 |
| PubMed_21979375_A1 | Up | 0.7915738618 |
| PubMed_21979375_A2 | Up | 1.5931431330 |
| GSE35957 | Down | -0.2961966799 |
| GSE36640 | Down | -0.3102105808 |
| GSE54402 | Up | 0.8995356944 |
| GSE9593 | Down | -0.1727717658 |
| GSE43922 | Up | 0.2149986873 |
| GSE24585 | Up | 0.1583500109 |
| GSE37065 | Down | -0.0734170633 |
| GSE28863_A1 | Down | -0.1138480032 |
| GSE28863_A2 | Down | -0.2352914696 |
| GSE28863_A3 | Up | 0.0907524773 |
| GSE28863_A4 | Up | 0.1030447849 |
| GSE48662 | Up | 0.1048934571 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
