HCSGD entry for PPFIA4
1. General information
| Official gene symbol | PPFIA4 |
|---|---|
| Entrez ID | 8497 |
| Gene full name | protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | TAS | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0009986 | Cell surface | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4061269101 | 0.0702233654 | 0.9999902473 | 0.5004036275 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.8499676203 |
| GSE13712_SHEAR | Up | 0.0621905430 |
| GSE13712_STATIC | Down | -0.1529876582 |
| GSE19018 | Up | 1.4673060805 |
| GSE19899_A1 | Down | -0.1489961735 |
| GSE19899_A2 | Up | 0.0270247602 |
| PubMed_21979375_A1 | Down | -0.0219113032 |
| PubMed_21979375_A2 | Up | 0.0707437902 |
| GSE35957 | Down | -0.7587879943 |
| GSE36640 | Down | -0.7038399513 |
| GSE54402 | Down | -0.3030624742 |
| GSE9593 | Down | -0.2080959743 |
| GSE43922 | Up | 0.0242729936 |
| GSE24585 | Up | 0.0095581568 |
| GSE37065 | Down | -0.0105183701 |
| GSE28863_A1 | Down | -0.1537083809 |
| GSE28863_A2 | Up | 0.3909829667 |
| GSE28863_A3 | Down | -0.0310582494 |
| GSE28863_A4 | Down | -0.1902805989 |
| GSE48662 | Up | 0.0169507572 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018203 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030881 | Microarray | Functional MTI (Weak) | 18591254 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
