HCSGD entry for PRPF38A
1. General information
| Official gene symbol | PRPF38A |
|---|---|
| Entrez ID | 84950 |
| Gene full name | PRP38 pre-mRNA processing factor 38 (yeast) domain containing A |
| Other gene symbols | Prp38 RP5-965L7.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005681 | Spliceosomal complex | IEA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7653715550 | 0.0178836746 | 0.9999902473 | 0.2619455760 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4035707377 |
| GSE13712_SHEAR | Down | -0.3564079227 |
| GSE13712_STATIC | Down | -0.2858662164 |
| GSE19018 | Down | -0.7511848468 |
| GSE19899_A1 | Down | -0.1046342871 |
| GSE19899_A2 | Down | -0.6011823250 |
| PubMed_21979375_A1 | Up | 0.5358042262 |
| PubMed_21979375_A2 | Down | -1.0350408682 |
| GSE35957 | Down | -0.2478042582 |
| GSE36640 | Down | -1.0778556054 |
| GSE54402 | Down | -0.0581877031 |
| GSE9593 | Down | -0.8381316390 |
| GSE43922 | Up | 0.1157319947 |
| GSE24585 | Up | 0.1355888259 |
| GSE37065 | Down | -0.0585966493 |
| GSE28863_A1 | Up | 0.8129390768 |
| GSE28863_A2 | Up | 0.9825742546 |
| GSE28863_A3 | Down | -0.2311942212 |
| GSE28863_A4 | Down | -0.3032571754 |
| GSE48662 | Down | -0.2228618577 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-192-5p | MIMAT0000222 | MIRT004858 | Luciferase reporter assay//qRT-PCR//Reporter assay;Microarray;Other | Functional MTI | 19074876 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024818 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
