HCSGD entry for PHF5A
1. General information
| Official gene symbol | PHF5A |
|---|---|
| Entrez ID | 84844 |
| Gene full name | PHD finger protein 5A |
| Other gene symbols | INI Rds3 SAP14b SF3b14b bK223H9.2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | IDA TAS | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | ISS | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005686 | U2 snRNP | IDA | cellular_component |
| GO:0005689 | U12-type spliceosomal complex | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0016363 | Nuclear matrix | IEA | cellular_component |
| GO:0016607 | Nuclear speck | ISS | cellular_component |
| GO:0045893 | Positive regulation of transcription, DNA-templated | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1522367463 | 0.2424330687 | 0.7787957054 | 0.9484365042 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3801124638 |
| GSE13712_SHEAR | Up | 0.2162255270 |
| GSE13712_STATIC | Up | 0.1773869947 |
| GSE19018 | Down | -0.3874205971 |
| GSE19899_A1 | Up | 0.0698047959 |
| GSE19899_A2 | Up | 0.2240593724 |
| PubMed_21979375_A1 | Up | 1.4022157916 |
| PubMed_21979375_A2 | Down | -0.1505936530 |
| GSE35957 | Down | -0.1101877291 |
| GSE36640 | Down | -0.5206833872 |
| GSE54402 | Up | 0.4057793172 |
| GSE9593 | Down | -0.2092597427 |
| GSE43922 | Up | 0.4527831744 |
| GSE24585 | Down | -0.2942805199 |
| GSE37065 | Down | -0.0544251686 |
| GSE28863_A1 | Down | -0.3703814414 |
| GSE28863_A2 | Down | -0.3636082907 |
| GSE28863_A3 | Down | -0.0176252691 |
| GSE28863_A4 | Up | 0.2582000977 |
| GSE48662 | Down | -0.2976227939 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1260b | MIMAT0015041 | MIRT052678 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
